I was building out my fleet of Crimson Fleet Phantoms and had a "destroy" mission, which my fleet did in like 3 seconds
However, I wanted to disable and board this ship... so I had to go and Unassign Crew to all three of my fleet ships. 
Unless I've missed it, there seems to be no way to set my fleet to allow me to capture (board) a ship. I tried setting Behavior to Defensive but that didn't change anything... that I noticed.
I started a new save just for this mod and having a ball! Although, fighting level 38 Watchtower goons when I'm level 20 was a bit of a challenge but the "Regrets" mod offered me some really good starting gear.
Oh and here's a screenshot of one of my Phantoms. Once fully built each one will have 8 Skydrop locations and still have 100 maneuverability.


Unless I've missed it, there seems to be no way to set my fleet to allow me to capture (board) a ship. I tried setting Behavior to Defensive but that didn't change anything... that I noticed.
Gren mentioned something about capturing Watchtower ships & he would scrap them. I never got around to this on my 1st run through of the MOD.
I started a new save just for this mod and having a ball! Although, fighting level 38 Watchtower goons when I'm level 20 was a bit of a challenge but the "Regrets" mod offered me some really good starting gear.
Oh and here's a screenshot of one of my Phantoms. Once fully built each one will have 8 Skydrop locations and still have 100 maneuverability.